So this theory probably isn't new but I had to share.
So I did a bit of looking around and despite it being seen in the early access days, no Reaper leviathan has Kharaa in the full game. Maida was riding a dead one all the way to sector zero feeding off its flesh and burning its fat for warmth... I think the Reaper may be immune to Kharaa, the reason it wasn't discovered by the architects is... I think the reason is obvious why, nobody but riley is insane enough to get near that thing, your PDA congratulates you for doing so! And there is no indication of any reaper samples in any of their bases around the planet. I think Reapers have their own immunity function to Kharaa that you can only recieve by eating the creature itself. It definitely isn't as permanent or effective as Enzyme 42 but since Maida has survived for a good while until the cure was released into nature, Reaper meat is probably a good way to slow the infection.
Feel free to point out flaws with this, but I think I'm onto something.